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  5. Gb_20174

Gb_20174 (SBP1)


Aliases : SBP1

Description : Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana (sp|f4idi6|brg2_arath : 156.0)


Gene families : OG0000315 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000315_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20174
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00100570 evm_27.TU.AmTr_v1... Probable BOI-related E3 ubiquitin-protein ligase 3... 0.04 OrthoFinder output from all 47 species
AMTR_s00048p00028800 evm_27.TU.AmTr_v1... Probable BOI-related E3 ubiquitin-protein ligase 3... 0.03 OrthoFinder output from all 47 species
AT4G17680 No alias SBP (S-ribonuclease binding protein) family protein 0.02 OrthoFinder output from all 47 species
Adi_g040999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08224 SBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08650 SBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os11g34080.1 LOC_Os11g34080 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023588 SBP1 not classified & original description: CDS=3746-4861 0.02 OrthoFinder output from all 47 species
Zm00001e001146_P001 SBP1, Zm00001e001146 Probable BOI-related E3 ubiquitin-protein ligase 3... 0.03 OrthoFinder output from all 47 species
Zm00001e024199_P001 Zm00001e024199 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e040813_P001 Zm00001e040813 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!