Gb_19758


Description : Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana (sp|q9fh87|pp447_arath : 608.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19758

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00205450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g25210,... 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00209480 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.08 OrthoFinder output from all 47 species
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.04 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.06 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.05 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.04 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G62470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
GSVIVT01010329001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
GSVIVT01022794001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.04 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.04 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.07 OrthoFinder output from all 47 species
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 OrthoFinder output from all 47 species
Gb_20750 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 OrthoFinder output from all 47 species
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.04 OrthoFinder output from all 47 species
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
Gb_23459 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.04 OrthoFinder output from all 47 species
LOC_Os04g55090.1 LOC_Os04g55090 Pentatricopeptide repeat-containing protein At1g80550,... 0.04 OrthoFinder output from all 47 species
LOC_Os05g28720.1 LOC_Os05g28720 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g28180.1 LOC_Os08g28180 Pentatricopeptide repeat-containing protein At2g13420,... 0.03 OrthoFinder output from all 47 species
MA_929381g0010 OTP43 OTP43 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g076370.4.1 Solyc04g076370 Pentatricopeptide repeat-containing protein At2g27800,... 0.04 OrthoFinder output from all 47 species
Solyc04g081950.4.1 Solyc04g081950 Pentatricopeptide repeat-containing protein At1g20300,... 0.02 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.07 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.03 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.05 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 253 280
IPR002885 Pentatricopeptide_repeat 640 669
IPR002885 Pentatricopeptide_repeat 529 576
IPR002885 Pentatricopeptide_repeat 459 505
IPR002885 Pentatricopeptide_repeat 289 334
IPR002885 Pentatricopeptide_repeat 389 438
IPR002885 Pentatricopeptide_repeat 353 382
No external refs found!