Gb_19514


Description : Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana (sp|q9lsf5|pp254_arath : 313.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19514
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.05 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01028975001 No alias Pentatricopeptide repeat-containing protein At1g55630... 0.04 OrthoFinder output from all 47 species
LOC_Os02g20160.1 LOC_Os02g20160 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os05g28720.1 LOC_Os05g28720 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_21580g0010 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
Solyc06g083200.3.1 Solyc06g083200 Pentatricopeptide repeat-containing protein At3g25210,... 0.03 OrthoFinder output from all 47 species
Solyc11g071670.2.1 Solyc11g071670 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.04 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 204 251
IPR002885 Pentatricopeptide_repeat 281 329
IPR002885 Pentatricopeptide_repeat 353 400
No external refs found!