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  5. Gb_18824

Gb_18824


Description : snRNP-associated protein (SR140)


Gene families : OG0003274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18824

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00173090 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Adi_g011558 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02691 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G097400.1 Ceric.14G097400 snRNP-associated protein *(SR140) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g10046 No alias snRNP-associated protein *(SR140) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01035985001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Len_g31360 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Mp6g17130.1 No alias snRNP-associated protein (SR140) 0.02 OrthoFinder output from all 47 species
Ore_g09321 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g02308 No alias snRNP-associated protein *(SR140) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08483 No alias snRNP-associated protein *(SR140) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g025280.4.1 Solyc03g025280 snRNP-associated protein (SR140) 0.04 OrthoFinder output from all 47 species
Spa_g12506 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07962 No alias snRNP-associated protein *(SR140) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013823_P001 Zm00001e013823 snRNP-associated protein (SR140) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013170 mRNA_splic_Cwf21_dom 871 914
IPR000061 Surp 337 389
IPR000504 RRM_dom 193 265
No external refs found!