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  5. Gb_17836

Gb_17836 (HSD1, ATHSD1)


Aliases : HSD1, ATHSD1

Description : 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis thaliana (sp|q0wrj2|tc10a_arath : 139.0)


Gene families : OG0000323 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17836
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Aev_g13345 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Ala_g25817 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03614 HSD4, AtHSD4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g31292 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07315 No alias ketosphinganine reductase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07316 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20206 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Aop_g20431 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Azfi_s0187.g056732 No alias not classified & original description: CDS=345-1343 0.03 OrthoFinder output from all 47 species
Ceric.13G034800.1 Ceric.13G034800 EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 OrthoFinder output from all 47 species
Dac_g34305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01080 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.04 OrthoFinder output from all 47 species
Dcu_g09776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12120 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Ehy_g00857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03383 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Ehy_g14251 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_06706 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_10045 HSD4, AtHSD4 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_18260 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_18262 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g22246 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
MA_10216834g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_10431393g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_115712g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_18262g0020 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_18495g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_29607g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_494509g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_66037g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_681548g0010 HSD1, ATHSD1 3-dehydrosphinganine reductase TSC10B OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_776612g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_9332825g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g05610 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Msp_g07597 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Nbi_g08537 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g53823 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Pnu_g22616 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Ppi_g04371 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Ppi_g62734 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013206 No alias not classified & original description: CDS=130-408 0.03 OrthoFinder output from all 47 species
Sam_g13230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13563 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Spa_g28867 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor &... 0.03 OrthoFinder output from all 47 species
Spa_g47327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00592 No alias EC_1.1 oxidoreductase acTing on CH-OH group of donor &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002347 SDR_fam 82 277
No external refs found!