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Gb_17436


Description : tRNA cytidine-methyltransferase (TRM4)


Gene families : OG0003443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17436
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT2G22400 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 OrthoFinder output from all 47 species
Aev_g04163 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ala_g19092 No alias EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Ceric.01G076100.1 Ceric.01G076100 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Cre03.g179860 No alias RNA processing.RNA modification.rRNA/tRNA... 0.01 OrthoFinder output from all 47 species
Ehy_g13681 No alias EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
LOC_Os09g29630.1 LOC_Os09g29630 tRNA cytidine-methyltransferase (TRM4) 0.03 OrthoFinder output from all 47 species
MA_62876g0010 No alias tRNA cytidine-methyltransferase (TRM4) 0.03 OrthoFinder output from all 47 species
Mp3g05200.1 No alias tRNA cytidine-methyltransferase (TRM4) 0.02 OrthoFinder output from all 47 species
Ppi_g14450 No alias EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Sam_g49641 No alias EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Zm00001e034437_P004 Zm00001e034437 tRNA cytidine-methyltransferase (TRM4) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001678 MeTrfase_RsmB/NOP2 172 376
No external refs found!