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  5. Gb_17348

Gb_17348 (PAB6)


Aliases : PAB6

Description : no hits & (original description: none)


Gene families : OG0004397 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17348
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Als_g01956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14198 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025014 PAB1 not classified & original description: CDS=309-3914 0.03 OrthoFinder output from all 47 species
Cba_g01318 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G030500.1 PAB1, Ceric.03G030500 not classified & original description: pacid=50572066... 0.03 OrthoFinder output from all 47 species
Dcu_g10701 ATRBP47C, RBP47C not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17086 PAB2, PABP2, ATPAB2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g06122 PAB6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g11847 PAB1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g11431 PAB2, PABP2, ATPAB2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_91352g0010 ATRBP45C no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ore_g44267 ATRBP47C', RBP47C' not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g29710 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g04608 PABP4, PAB4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12301 PAB1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 1 53
IPR000504 RRM_dom 83 141
No external refs found!