Gb_17291 (SVR7)


Aliases : SVR7

Description : Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana (sp|q8gwe0|pp314_arath : 648.0)


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17291

Target Alias Description ECC score Gene Family Method Actions
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.1 OrthoFinder output from all 47 species
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.08 OrthoFinder output from all 47 species
Ala_g02200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0262.g060841 No alias not classified & original description: CDS=82-2085 0.04 OrthoFinder output from all 47 species
Ceric.15G014300.1 Ceric.15G014300 not classified & original description: pacid=50639905... 0.03 OrthoFinder output from all 47 species
Dde_g07226 SVR7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003493001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.04 OrthoFinder output from all 47 species
Mp1g08510.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.05 OrthoFinder output from all 47 species
Solyc08g077140.1.1 Solyc08g077140 Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
Solyc11g012670.1.1 SVR7, Solyc11g012670 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder output from all 47 species
Spa_g04939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.03 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 356 403
IPR002885 Pentatricopeptide_repeat 426 471
IPR002885 Pentatricopeptide_repeat 282 312
IPR002885 Pentatricopeptide_repeat 500 526
IPR002885 Pentatricopeptide_repeat 323 353
No external refs found!