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  5. Gb_16420

Gb_16420


Description : component VPS51/UNH of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes


Gene families : OG0003991 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003991_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16420

Target Alias Description ECC score Gene Family Method Actions
AT4G02030 No alias Vps51/Vps67 family (components of vesicular transport) protein 0.03 OrthoFinder output from all 47 species
Ala_g06971 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Als_g19919 No alias component *(VPS51/UNH) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Azfi_s0087.g042305 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Cba_g11605 No alias component *(VPS51/UNH) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ceric.37G013400.1 Ceric.37G013400 component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Cre09.g404650 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.01 OrthoFinder output from all 47 species
Dcu_g16393 No alias component *(VPS51/UNH) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
GSVIVT01028119001 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.04 OrthoFinder output from all 47 species
LOC_Os03g52770.1 LOC_Os03g52770 component VPS51/UNH of GARP/EARP... 0.09 OrthoFinder output from all 47 species
Mp6g05400.1 No alias component VPS51/UNH of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Pir_g11809 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Smo178902 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Smo440937 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.06 OrthoFinder output from all 47 species
Solyc06g009650.3.1 Solyc06g009650 component VPS51/UNH of GARP/EARP... 0.08 OrthoFinder output from all 47 species
Spa_g06241 No alias component *(VPS51/UNH) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Zm00001e012075_P003 Zm00001e012075 component VPS51/UNH of GARP/EARP... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!