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  5. Gb_15740

Gb_15740 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : component CAF of CRS2-CAF plastidial RNA splicing factor complexes


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Gb_15740

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00043140 ATCAF1, CAF1,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Aev_g10007 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Ala_g19873 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Aob_g14385 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Ceric.11G050500.1 CAF2, ATCAF2,... component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ceric.13G021700.1 ATCAF1, CAF1,... component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
LOC_Os01g21990.1 CAF2, ATCAF2,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.09 OrthoFinder output from all 47 species
LOC_Os01g31110.1 ATCAF1, CAF1,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 OrthoFinder output from all 47 species
MA_10370743g0020 CAF2, ATCAF2 CRS2-associated factor 1, chloroplastic OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_10432369g0010 ATCAF1, CAF1 CRS2-associated factor 2, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Nbi_g30110 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.06 OrthoFinder output from all 47 species
Ore_g02160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08767 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Solyc05g018240.4.1 ATCAF1, CAF1,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 229 312
IPR001890 RNA-binding_CRM 347 430
No external refs found!