Gb_15074

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 261.0)

Gene families : OG0000011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_15074
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene00247.t1	CRK8, Aspi01Gene00247	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene20006.t1	Aspi01Gene20006	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene63301.t1	ORF240B, Aspi01Gene63301	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.1Z204500.1	Ceric.1Z204500	not classified & original description: pacid=50576896...	0.04	OrthoFinder output from all 47 species
Gb_13903	CRK8	Retrovirus-related Pol polyprotein from transposon TNT...	0.1	OrthoFinder output from all 47 species
Gb_14660	ORF240B	Retrovirus-related Pol polyprotein from transposon RE1...	0.05	OrthoFinder output from all 47 species
Gb_16945	ORF111A	Retrovirus-related Pol polyprotein from transposon RE1...	0.05	OrthoFinder output from all 47 species
Gb_27234	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Gb_29290	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	OrthoFinder output from all 47 species
Gb_41260	CRK8	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	OrthoFinder output from all 47 species
Pnu_g12005	ORF240B	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g13189	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	515	626
IPR025724	GAG-pre-integrase_dom	438	497

External Links

No external refs found!