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  5. Gb_14294

Gb_14294


Description : component SF3B1 of splicing factor 3B complex


Gene families : OG0002634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_14294

Target Alias Description ECC score Gene Family Method Actions
AT5G64270 No alias splicing factor, putative 0.05 OrthoFinder output from all 47 species
Als_g10272 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Aob_g02393 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Aop_g36775 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01025852001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 OrthoFinder output from all 47 species
Gb_12533 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g05310.4 LOC_Os02g05310 component SF3B1 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Len_g38026 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
MA_11685g0010 No alias component SF3B1 of splicing factor 3B complex 0.06 OrthoFinder output from all 47 species
Mp5g19650.1 No alias component SF3B1 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Msp_g11331 No alias component *(SF3B1) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Nbi_g04463 No alias component *(SF3B1) of splicing factor 3B complex &... 0.08 OrthoFinder output from all 47 species
Ore_g05022 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Pir_g13624 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000478 No alias component *(SF3B1) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003182 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Smo97336 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Tin_g02906 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e025224_P001 Zm00001e025224 component SF3B1 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015016 SF3b_su1 292 422
No external refs found!