Gb_12326 (SDE1, RDR6, SGS2)

Aliases : SDE1, RDR6, SGS2

Description : ssRNA polymerase (RDR6)

Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_12326

Target	Alias	Description	ECC score	Gene Family Method
Adi_g008879	ATRDRP1, RDR1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g114067	ATRDRP1, RDR1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g39991	ATRDRP1, RDR1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07935	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01035851001	SDE1, RDR6, SGS2	RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase	0.03	OrthoFinder output from all 47 species
LOC_Os01g34350.1	SDE1, RDR6,...	ssRNA polymerase (RDR6)	0.06	OrthoFinder output from all 47 species
Len_g14350	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g03519	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09805	SDE1, RDR6, SGS2	ssRNA polymerase *(RDR6) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g06684	SMD1, RDR2	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006013	mannose metabolic process	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	405	988

External Links

No external refs found!