Description : Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana (sp|q94aj5|pglr5_arath : 383.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 219.7)
Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Gb_12008 | |
Cluster | HCCA: Cluster_30 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00197210 | evm_27.TU.AmTr_v1... | Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00096p00105250 | evm_27.TU.AmTr_v1... | Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase | 0.04 | OrthoFinder output from all 47 species | |
AT1G80170 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Ala_g25061 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os05g46520.1 | LOC_Os05g46520 | Probable polygalacturonase At1g80170 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
MA_63122g0010 | No alias | Polygalacturonase OS=Actinidia deliciosa... | 0.03 | OrthoFinder output from all 47 species | |
MA_754919g0010 | No alias | Polygalacturonase OS=Actinidia deliciosa... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g03112 | No alias | EC_3.2 glycosylase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Smo78038 | No alias | Cell wall.pectin.modification and... | 0.02 | OrthoFinder output from all 47 species | |
Solyc03g116500.4.1 | Solyc03g116500 | Probable polygalacturonase At1g80170 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g008230.3.1 | Solyc04g008230 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Solyc05g005040.4.1 | Solyc05g005040 | polygalacturonase (PGX1) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e027946_P001 | Zm00001e027946 | polygalacturonase (PGX1) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004650 | polygalacturonase activity | IEA | Interproscan |
BP | GO:0005975 | carbohydrate metabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
BP | GO:0006631 | fatty acid metabolic process | IEP | HCCA |
BP | GO:0006633 | fatty acid biosynthetic process | IEP | HCCA |
BP | GO:0009605 | response to external stimulus | IEP | HCCA |
BP | GO:0009606 | tropism | IEP | HCCA |
BP | GO:0010274 | hydrotropism | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000743 | Glyco_hydro_28 | 123 | 447 |
No external refs found! |