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  5. Gb_11871

Gb_11871


Description : Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana (sp|p0c8a0|pp275_arath : 516.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_11871
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00205450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g25210,... 0.06 OrthoFinder output from all 47 species
AMTR_s00003p00209480 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00256660 OTP43,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.04 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.07 OrthoFinder output from all 47 species
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00240990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55630... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.08 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.06 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.05 OrthoFinder output from all 47 species
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.07 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.04 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.09 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.05 OrthoFinder output from all 47 species
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G52640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G15200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.09 OrthoFinder output from all 47 species
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G62470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g012989 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g023342 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g48152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene64236.t1 Aspi01Gene64236 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000737.24 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.110 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g11222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g03918 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g09454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g11888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23072 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g14509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.06 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.06 OrthoFinder output from all 47 species
GSVIVT01010329001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.05 OrthoFinder output from all 47 species
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.05 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.05 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.1 OrthoFinder output from all 47 species
GSVIVT01022794001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.05 OrthoFinder output from all 47 species
GSVIVT01026360001 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.04 OrthoFinder output from all 47 species
GSVIVT01026463001 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.07 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.06 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.07 OrthoFinder output from all 47 species
Gb_04017 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_05336 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.08 OrthoFinder output from all 47 species
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.07 OrthoFinder output from all 47 species
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.06 OrthoFinder output from all 47 species
Gb_12874 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.07 OrthoFinder output from all 47 species
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.11 OrthoFinder output from all 47 species
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Gb_20376 No alias group-II intron mitochondrial splicing factor (MISF68) 0.07 OrthoFinder output from all 47 species
Gb_23459 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.12 OrthoFinder output from all 47 species
Gb_27355 No alias Pentatricopeptide repeat-containing protein At5g11310,... 0.04 OrthoFinder output from all 47 species
Gb_32987 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.09 OrthoFinder output from all 47 species
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.16 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
LOC_Os01g60010.1 LOC_Os01g60010 Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g11020.1 LOC_Os03g11020 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.06 OrthoFinder output from all 47 species
LOC_Os05g28720.1 LOC_Os05g28720 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g28180.1 LOC_Os08g28180 Pentatricopeptide repeat-containing protein At2g13420,... 0.05 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.11 OrthoFinder output from all 47 species
MA_10433557g0010 No alias Pentatricopeptide repeat-containing protein At2g27800,... 0.05 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.04 OrthoFinder output from all 47 species
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.06 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.1 OrthoFinder output from all 47 species
MA_38485g0010 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.05 OrthoFinder output from all 47 species
MA_387336g0010 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.05 OrthoFinder output from all 47 species
MA_455059g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_69152g0010 MEE40 Pentatricopeptide repeat-containing protein At3g53700,... 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.06 OrthoFinder output from all 47 species
MA_845827g0010 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.06 OrthoFinder output from all 47 species
MA_929381g0010 OTP43 OTP43 mitochondrial RNA splicing factor 0.07 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.05 OrthoFinder output from all 47 species
Msp_g08820 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g01365 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14954 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006850.1.1 Solyc01g006850 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc01g097130.4.1 Solyc01g097130 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
Solyc01g097730.4.1 Solyc01g097730 Pentatricopeptide repeat-containing protein At3g60050... 0.04 OrthoFinder output from all 47 species
Solyc03g112560.4.1 Solyc03g112560 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.07 OrthoFinder output from all 47 species
Solyc03g117570.3.1 Solyc03g117570 Pentatricopeptide repeat-containing protein At1g80880,... 0.06 OrthoFinder output from all 47 species
Solyc04g076370.4.1 Solyc04g076370 Pentatricopeptide repeat-containing protein At2g27800,... 0.09 OrthoFinder output from all 47 species
Solyc04g081950.4.1 Solyc04g081950 Pentatricopeptide repeat-containing protein At1g20300,... 0.04 OrthoFinder output from all 47 species
Solyc05g008330.3.1 Solyc05g008330 Pentatricopeptide repeat-containing protein At1g71060,... 0.05 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.11 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.08 OrthoFinder output from all 47 species
Solyc11g071670.2.1 Solyc11g071670 Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Solyc12g043100.2.1 Solyc12g043100 group-II intron mitochondrial splicing factor (MISF68) 0.03 OrthoFinder output from all 47 species
Tin_g09961 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.05 OrthoFinder output from all 47 species
Zm00001e005758_P001 Zm00001e005758 Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.04 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.06 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.06 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.07 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 231 263
IPR002885 Pentatricopeptide_repeat 373 418
IPR002885 Pentatricopeptide_repeat 523 562
IPR002885 Pentatricopeptide_repeat 446 492
IPR002885 Pentatricopeptide_repeat 303 351
IPR002885 Pentatricopeptide_repeat 166 194
IPR002885 Pentatricopeptide_repeat 273 298
No external refs found!