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  5. Gb_11641

Gb_11641


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 83.6)


Gene families : OG0000001 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_11641

Target Alias Description ECC score Gene Family Method Actions
Aev_g04322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g26237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g64570 ORF158 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g68986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.38 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.61 ORF158 Uncharacterized mitochondrial protein AtMg00860... 0.03 OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.77 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_02517 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_05629 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 OrthoFinder output from all 47 species
Gb_09554 ORF158 RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 OrthoFinder output from all 47 species
Gb_17315 ORF158 Uncharacterized mitochondrial protein AtMg00860... 0.05 OrthoFinder output from all 47 species
Gb_18033 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_25344 ORF158 Uncharacterized mitochondrial protein AtMg00860... 0.05 OrthoFinder output from all 47 species
Ppi_g03922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041577 RT_RNaseH_2 288 383
IPR000477 RT_dom 66 224
No external refs found!