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  5. Gb_10805

Gb_10805 (SMU1)


Aliases : SMU1

Description : Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana (sp|q8w117|smu1_arath : 896.0)


Gene families : OG0006796 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006796_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_10805

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00133460 SMU1,... Suppressor of mec-8 and unc-52 protein homolog 1... 0.06 OrthoFinder output from all 47 species
Cre01.g020400 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.02 OrthoFinder output from all 47 species
Ehy_g17815 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.04 OrthoFinder output from all 47 species
LOC_Os01g21940.1 SMU1, LOC_Os01g21940 Suppressor of mec-8 and unc-52 protein homolog 1... 0.05 OrthoFinder output from all 47 species
Len_g02315 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.05 OrthoFinder output from all 47 species
Lfl_g03888 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
Mp4g04520.1 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.05 OrthoFinder output from all 47 species
Sam_g18149 No alias component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Solyc06g064830.3.1 SMU1, Solyc06g064830 Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species
Zm00001e017539_P002 SMU1, Zm00001e017539 Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 206 242
IPR001680 WD40_repeat 263 291
IPR001680 WD40_repeat 476 512
IPR001680 WD40_repeat 296 333
IPR001680 WD40_repeat 340 377
No external refs found!