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  5. Gb_07655

Gb_07655


Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana (sp|q9fjr0|rent1_arath : 201.0)


Gene families : OG0006888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07655

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00245550 evm_27.TU.AmTr_v1... Regulator of nonsense transcripts 1 homolog... 0.08 OrthoFinder output from all 47 species
AT5G35970 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 OrthoFinder output from all 47 species
Adi_g009690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g077684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13293 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09323 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g09081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19085 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0225.g058913 No alias not classified & original description: CDS=1-1656 0.05 OrthoFinder output from all 47 species
Cba_g06579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G036700.1 Ceric.19G036700 not classified & original description: pacid=50576348... 0.06 OrthoFinder output from all 47 species
Dac_g15964 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01970 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g37707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g47560.1 LOC_Os02g47560 Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
LOC_Os09g04440.1 LOC_Os09g04440 Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Lfl_g36332 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10434072g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_10435849g0020 No alias Regulator of nonsense transcripts 1 homolog... 0.09 OrthoFinder output from all 47 species
MA_8286g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g22970.1 No alias Regulator of nonsense transcripts 1 homolog... 0.05 OrthoFinder output from all 47 species
Msp_g02098 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g08978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09781 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g04666 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g36707 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo90782 No alias Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Solyc03g097370.4.1 Solyc03g097370 Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Tin_g09516 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016851 magnesium chelatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP HCCA
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 738 942
IPR041677 DNA2/NAM7_AAA_11 513 729
No external refs found!