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Gb_06893


Description : Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana (sp|q9ca58|pp120_arath : 328.0)


Gene families : OG0016033 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0016033_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06893
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT4G19890 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
LOC_Os11g39360.2 LOC_Os11g39360 Pentatricopeptide repeat-containing protein At4g19890... 0.08 OrthoFinder output from all 47 species
Solyc02g068890.3.1 Solyc02g068890 Pentatricopeptide repeat-containing protein At4g19890... 0.06 OrthoFinder output from all 47 species
Zm00001e021197_P002 Zm00001e021197 Pentatricopeptide repeat-containing protein At4g19890... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 250 299
IPR002885 Pentatricopeptide_repeat 321 369
IPR002885 Pentatricopeptide_repeat 566 615
IPR002885 Pentatricopeptide_repeat 390 439
IPR002885 Pentatricopeptide_repeat 637 683
IPR002885 Pentatricopeptide_repeat 212 242
IPR002885 Pentatricopeptide_repeat 531 557
IPR002885 Pentatricopeptide_repeat 457 490
IPR002885 Pentatricopeptide_repeat 178 211
IPR002885 Pentatricopeptide_repeat 502 524
IPR002885 Pentatricopeptide_repeat 85 108
No external refs found!