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  5. Gb_04917

Gb_04917


Description : UBP1-associated protein 2C OS=Arabidopsis thaliana (sp|q9lka4|uba2c_arath : 289.0)


Gene families : OG0000537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04917

Target Alias Description ECC score Gene Family Method Actions
Adi_g088442 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Adi_g102699 UBA2A regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Aop_g30808 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Dac_g05700 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Ehy_g06784 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01037491001 UBA2A UBP1-associated protein 2A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Len_g09139 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.05 OrthoFinder output from all 47 species
Len_g10422 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.04 OrthoFinder output from all 47 species
Len_g46700 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
MA_129986g0010 No alias UBP1-associated protein 2B OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_158497g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_287080g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_3634858g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_8212g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Ore_g05902 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Ore_g09828 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Ore_g10985 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Ore_g20567 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Ore_g23311 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Ore_g45365 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Ppi_g02967 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015184 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.02 OrthoFinder output from all 47 species
Smo163608 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g008970.4.1 UBA2A, Solyc01g008970 UBP1-associated protein 2A OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc02g021560.4.1 Solyc02g021560 UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g014210.3.1 Solyc12g014210 UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g38080 No alias regulatory protein *(UBA1/2) of UBP1 activity & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 156 222
IPR000504 RRM_dom 65 131
No external refs found!