Gb_04790 (ATDEF1, PDF1A)


Aliases : ATDEF1, PDF1A

Description : formylmethionine deformylase (PDF)


Gene families : OG0007852 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007852_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04790
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Aop_g19861 ATDEF1, PDF1A EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030700 ATDEF1, PDF1A EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Ehy_g03309 ATDEF1, PDF1A EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
GSVIVT01017280001 ATDEF1, PDF1A Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
LOC_Os01g37510.1 ATDEF1, PDF1A,... formylmethionine deformylase (PDF) 0.06 OrthoFinder output from all 47 species
MA_395770g0010 ATDEF1, PDF1A formylmethionine deformylase (PDF) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000710 ATDEF1, PDF1A EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Solyc07g015860.3.1 ATDEF1, PDF1A,... formylmethionine deformylase (PDF) 0.03 OrthoFinder output from all 47 species
Zm00001e035712_P002 ATDEF1, PDF1A,... formylmethionine deformylase (PDF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR023635 Peptide_deformylase 108 272
No external refs found!