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  5. Gb_04223

Gb_04223 (G2484-1, ATG2484-1)


Aliases : G2484-1, ATG2484-1

Description : no hits & (original description: none)


Gene families : OG0002573 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002573_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00148070 G2484-1,... No description available 0.04 OrthoFinder output from all 47 species
AT4G17330 G2484-1, ATG2484-1 G2484-1 protein 0.17 OrthoFinder output from all 47 species
Adi_g077944 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g087228 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g07336 G2484-1, ATG2484-1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g27665 G2484-1, ATG2484-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12999 G2484-1, ATG2484-1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g64007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12306 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09060 G2484-1, ATG2484-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene43305.t1 G2484-1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43305.t2 G2484-1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044091 G2484-1, ATG2484-1 not classified & original description: CDS=19-6000 0.07 OrthoFinder output from all 47 species
Cba_g22302 G2484-1, ATG2484-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20555 G2484-1, ATG2484-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12709 G2484-1, ATG2484-1 not classified & original description: none 0.12 OrthoFinder output from all 47 species
GSVIVT01004716001 G2484-1, ATG2484-1 No description available 0.09 OrthoFinder output from all 47 species
LOC_Os10g41030.1 G2484-1,... no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g14749 G2484-1, ATG2484-1 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g03523 G2484-1, ATG2484-1 not classified & original description: none 0.1 OrthoFinder output from all 47 species
MA_173703g0010 G2484-1, ATG2484-1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_20337g0010 G2484-1, ATG2484-1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g09007 G2484-1, ATG2484-1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g12170 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25098 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g39400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09835 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g08133 G2484-1, ATG2484-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16311 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014511 G2484-1, ATG2484-1 not classified & original description: CDS=645-7112 0.06 OrthoFinder output from all 47 species
Sam_g18066 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Smo415212 G2484-1, ATG2484-1 No description available 0.07 OrthoFinder output from all 47 species
Solyc08g078530.4.1 G2484-1,... no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g29421 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33264 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49740 G2484-1, ATG2484-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e002323_P004 G2484-1,... no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e037875_P005 G2484-1,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008395 Agenet-like_dom 2895 2961
No external refs found!