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  5. Gb_03647

Gb_03647 (4CL1, AT4CL1, 4CL.1)


Aliases : 4CL1, AT4CL1, 4CL.1

Description : 4-coumarate--CoA ligase OS=Pinus taeda (sp|p41636|4cl_pinta : 201.0)


Gene families : OG0000673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000673_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03647

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00217510 ACOS5,... 4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00025p00217630 ACOS5,... 4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G62940 ACOS5 acyl-CoA synthetase 5 0.04 OrthoFinder output from all 47 species
Ala_g09467 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Als_g14525 4CL1, AT4CL1, 4CL.1 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Als_g22886 4CL3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32388 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Als_g57331 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g11791 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.07 OrthoFinder output from all 47 species
Aop_g20296 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene16478.t1 ACOS5, Aspi01Gene16478 acyl-CoA synthetase *(ACS5) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007625 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0013.g013344 AT4CL2, 4CL2 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G038600.1 4CL3, Ceric.12G038600 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G077900.1 4CL3, Ceric.12G077900 not classified & original description: pacid=50601305... 0.03 OrthoFinder output from all 47 species
Ceric.15G048400.1 4CL3, Ceric.15G048400 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.1Z155100.1 4CL3, Ceric.1Z155100 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Dac_g07445 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Dcu_g38297 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Dde_g18987 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Dde_g24331 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Dde_g31145 ACOS5 acyl-CoA synthetase *(ACS5) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010497001 ACOS5 Cell wall.sporopollenin.synthesis.ACS5 acyl-CoA synthetase 0.04 OrthoFinder output from all 47 species
GSVIVT01029182001 4CL1, AT4CL1, 4CL.1 Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.05 OrthoFinder output from all 47 species
Gb_40571 AT4CL2, 4CL2 p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.05 OrthoFinder output from all 47 species
Gb_40573 4CL3 p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.04 OrthoFinder output from all 47 species
LOC_Os04g24530.1 ACOS5, LOC_Os04g24530 acyl-CoA synthetase (ACS5) 0.03 OrthoFinder output from all 47 species
LOC_Os08g14760.1 4CL1, AT4CL1,... p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 OrthoFinder output from all 47 species
LOC_Os08g34790.1 AT4CL2, 4CL2,... p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.05 OrthoFinder output from all 47 species
Msp_g00641 4CL1, AT4CL1, 4CL.1 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Msp_g40313 ACOS5 acyl-CoA synthetase *(ACS5) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03050 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Ore_g42310 ACOS5 acyl-CoA synthetase *(ACS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24493 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Sam_g51306 No alias acyl-CoA synthetase *(ACS5) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g088710.3.1 ACOS5, Solyc02g088710 acyl-CoA synthetase (ACS5) 0.03 OrthoFinder output from all 47 species
Solyc03g097030.3.1 4CL3, Solyc03g097030 p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.05 OrthoFinder output from all 47 species
Tin_g07442 4CL3 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e004061_P001 4CL1, AT4CL1,... p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.04 OrthoFinder output from all 47 species
Zm00001e008138_P001 ACOS5, Zm00001e008138 acyl-CoA synthetase (ACS5) 0.03 OrthoFinder output from all 47 species
Zm00001e016374_P001 ACOS5, Zm00001e016374 acyl-CoA synthetase (ACS5) 0.03 OrthoFinder output from all 47 species
Zm00001e023286_P002 4CL3, Zm00001e023286 p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 2 133
No external refs found!