Gb_03500 (ATWHY1, WHY1, PTAC1)

Aliases : ATWHY1, WHY1, PTAC1

Description : recombination mediator (Whirly). Whirly-type plastidial RNA splicing factor

Gene families : OG0002379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002379_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_03500

Target	Alias	Description	ECC score	Gene Family Method
AT2G02740	WHY3, PTAC11, ATWHY3	ssDNA-binding transcriptional regulator	0.09	OrthoFinder output from all 47 species
Adi_g011021	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g03634	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0290.g063328	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description:...	0.02	OrthoFinder output from all 47 species
GSVIVT01020061001	ATWHY1, WHY1, PTAC1	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
Solyc05g007100.3.1	ATWHY1, WHY1,...	recombination mediator (Whirly). Whirly-type plastidial...	0.04	OrthoFinder output from all 47 species
Tin_g09532	ATWHY1, WHY1, PTAC1	recombination mediator *(Whirly) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e029993_P002	ATWHY1, WHY1,...	recombination mediator (Whirly). Whirly-type plastidial...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006378	mRNA polyadenylation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013742	Whirly	45	178

External Links

No external refs found!

Gb_03500 (ATWHY1, WHY1, PTAC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation