Gb_03447 (RABA4D, ATRABA4D)

Aliases : RABA4D, ATRABA4D

Description : A-class RAB GTPase

Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_03447
Cluster	HCCA: Cluster_118

Target	Alias	Description	ECC score	Gene Family Method
AT1G01200	RABA3, ATRAB-A3, ATRABA3	RAB GTPase homolog A3	0.05	OrthoFinder output from all 47 species
Aop_g41162	ATRABA4C, RABA4C, SMG1	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g15524	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01027396001	RABA3, ATRAB-A3, ATRABA3	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Lfl_g28692	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g03577	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011977	RABA4D, ATRABA4D	A-class RAB GTPase & original description: CDS=720-1379	0.02	OrthoFinder output from all 47 species
Sam_g08199	No alias	A-class RAB GTPase & original description: none	0.06	OrthoFinder output from all 47 species
Smo148444	ATRABA4C, RABA4C, SMG1	Vesicle trafficking.regulation of membrane tethering and...	0.05	OrthoFinder output from all 47 species
Solyc01g096220.3.1	RABA3, ATRAB-A3,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species
Zm00001e000673_P001	AtRABA4a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	177

External Links

No external refs found!