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  5. Gb_03310

Gb_03310 (ATCAP-C, ATSMC4, SMC3, ATSMC3)


Aliases : ATCAP-C, ATSMC4, SMC3, ATSMC3

Description : component CAP-C/SMC4 of condensin I/II complex


Gene families : OG0004748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03310
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00079920 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.15 OrthoFinder output from all 47 species
Adi_g019665 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Ala_g23510 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.13 OrthoFinder output from all 47 species
Als_g16126 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.12 OrthoFinder output from all 47 species
Aop_g09601 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.18 OrthoFinder output from all 47 species
Aspi01Gene04548.t1 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.1 OrthoFinder output from all 47 species
Aspi01Gene08655.t1 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043172 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Ceric.07G037500.1 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.24 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000711.41 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.11 OrthoFinder output from all 47 species
Cre12.g493400 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.11 OrthoFinder output from all 47 species
Dac_g01058 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.13 OrthoFinder output from all 47 species
Dcu_g14679 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.18 OrthoFinder output from all 47 species
GSVIVT01011408001 ATCAP-C, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.22 OrthoFinder output from all 47 species
LOC_Os05g41750.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.1 OrthoFinder output from all 47 species
Len_g03914 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.17 OrthoFinder output from all 47 species
Lfl_g38059 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.03 OrthoFinder output from all 47 species
MA_10325649g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.03 OrthoFinder output from all 47 species
MA_257738g0010 ATCAP-C, ATSMC4,... no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
MA_317249g0010 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.2 OrthoFinder output from all 47 species
MA_7369647g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.2 OrthoFinder output from all 47 species
MA_82161g0010 ATCAP-C, ATSMC4,... Structural maintenance of chromosomes protein 4... 0.2 OrthoFinder output from all 47 species
Mp5g06430.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.2 OrthoFinder output from all 47 species
Msp_g32088 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.16 OrthoFinder output from all 47 species
Nbi_g09270 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.18 OrthoFinder output from all 47 species
Ppi_g09236 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015991 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Sam_g07968 No alias component *(CAP-C/SMC4) of condensin I/II complex &... 0.12 OrthoFinder output from all 47 species
Solyc02g087980.3.1 ATCAP-C, ATSMC4,... component CAP-C/SMC4 of condensin I/II complex 0.16 OrthoFinder output from all 47 species
Spa_g10497 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.14 OrthoFinder output from all 47 species
Tin_g01288 ATCAP-C, ATSMC4,... component *(CAP-C/SMC4) of condensin I/II complex &... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010935 SMC_hinge 527 643
IPR003395 RecF/RecN/SMC_N 784 1199
IPR003395 RecF/RecN/SMC_N 2 666
No external refs found!