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  5. Gb_02097

Gb_02097


Description : component TRM732 of TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex


Gene families : OG0006426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02097

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00258470 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.07 OrthoFinder output from all 47 species
AT3G55160 No alias unknown protein; EXPRESSED IN: 11 plant structures;... 0.05 OrthoFinder output from all 47 species
Aev_g20224 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.04 OrthoFinder output from all 47 species
Aob_g33335 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.02 OrthoFinder output from all 47 species
Aop_g26362 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.02 OrthoFinder output from all 47 species
Azfi_s0208.g058004 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.05 OrthoFinder output from all 47 species
Dcu_g13115 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.08 OrthoFinder output from all 47 species
Dde_g12713 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01011388001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
LOC_Os08g07290.1 LOC_Os08g07290 component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Len_g23489 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Len_g48843 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
MA_177186g0010 No alias component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.07 OrthoFinder output from all 47 species
MA_41436g0010 No alias component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.08 OrthoFinder output from all 47 species
Nbi_g19636 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Ore_g33228 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.04 OrthoFinder output from all 47 species
Sam_g18072 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.02 OrthoFinder output from all 47 species
Smo74297 No alias RNA processing.RNA modification.rRNA/tRNA... 0.06 OrthoFinder output from all 47 species
Solyc03g062650.3.1 Solyc03g062650 component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Spa_g15714 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.04 OrthoFinder output from all 47 species
Zm00001e040139_P001 Zm00001e040139 component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR019442 THADA/TRM732_DUF2428 1133 1225
No external refs found!