Cpa|evm.model.tig00021721.4


Description : Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate epimerase


Gene families : OG0003705 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003705_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021721.4
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Aev_g07726 No alias EC_5.1 racemase or epimerase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08441 No alias EC_5.1 racemase or epimerase & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e002914_P004 Zm00001e002914 diaminopimelate epimerase 0.02 OrthoFinder output from all 47 species
Zm00001e018185_P007 Zm00001e018185 diaminopimelate epimerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008837 diaminopimelate epimerase activity IEA Interproscan
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR001653 DAP_epimerase_DapF 228 340
IPR001653 DAP_epimerase_DapF 84 190
No external refs found!