Cpa|evm.model.tig00021616.10 (ATMSH3, MSH3)

Aliases : ATMSH3, MSH3

Description : DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana

Gene families : OG0004028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004028_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021616.10
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
Ceric.36G043400.1	ATMSH3, MSH3,...	component *(MSH3) of MSH2-x mismatch repair heterodimers...	0.01	OrthoFinder output from all 47 species
Cre09.g397845	ATMSH3, MSH3	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
MA_33214g0010	ATMSH3, MSH3	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_540053g0010	ATMSH3, MSH3	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Pir_g16217	ATMSH3, MSH3	component *(MSH3) of MSH2-x mismatch repair heterodimers...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001458	ATMSH3, MSH3	not classified & original description: CDS=1-3354	0.02	OrthoFinder output from all 47 species
Tin_g09537	ATMSH3, MSH3	component *(MSH3) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	898	1043
IPR007696	DNA_mismatch_repair_MutS_core	572	746
IPR007860	DNA_mmatch_repair_MutS_con_dom	422	539
IPR007695	DNA_mismatch_repair_MutS-lik_N	276	387

External Links

No external refs found!

Cpa|evm.model.tig00021616.10 (ATMSH3, MSH3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation