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  5. Cpa|evm.model.tig00021589.12

Cpa|evm.model.tig00021589.12 (NRPE6A, NRPD6A, NRPB6A)


Aliases : NRPE6A, NRPD6A, NRPB6A

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 6


Gene families : OG0004292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021589.12
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AT2G04630 NRPB6B, NRPE6B RNA polymerase Rpb6 0.01 OrthoFinder output from all 47 species
AT5G51940 NRPE6A, NRPD6A, NRPB6A RNA polymerase Rpb6 0.02 OrthoFinder output from all 47 species
Azfi_s0064.g035705 NRPE6A, NRPD6A, NRPB6A component *(NRP-ABCDE6) of RNA polymerase complexes &... 0.03 OrthoFinder output from all 47 species
MA_103708g0010 NRPE6A, NRPD6A, NRPB6A subunit 6 of RNA polymerase 0.02 OrthoFinder output from all 47 species
Sam_g46922 No alias component *(NRP-ABCDE6) of RNA polymerase complexes &... 0.02 OrthoFinder output from all 47 species
Solyc09g010500.3.1 NRPB6B, NRPE6B,... subunit 6 of RNA polymerase 0.02 OrthoFinder output from all 47 species
Zm00001e012477_P001 NRPE6A, NRPD6A,... subunit 6 of RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006110 Pol_omega/Rpo6/RPB6 22 73
No external refs found!