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  5. Cpa|evm.model.tig00021464.53

Cpa|evm.model.tig00021464.53 (AtRABH1e, RABH1e)


Aliases : AtRABH1e, RABH1e

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.H-class RAB GTPase


Gene families : OG0001773 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021464.53
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00155900 AtRABH1e,... Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
AT2G44610 RAB6A, ATRABH1B,... Ras-related small GTP-binding family protein 0.01 OrthoFinder output from all 47 species
Adi_g001484 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06784 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g02909 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07607 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52153.t1 AtRABH1e,... H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g24911 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.01G018400.1 AtRABH1e,... H-class RAB GTPase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.30G035400.1 AtRABH1e,... H-class RAB GTPase & original description:... 0.01 OrthoFinder output from all 47 species
Cre01.g047550 RAB6A, ATRABH1B,... Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Dcu_g07473 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g35885 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04224 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g09589 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g13691 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013222001 RAB6A, ATRABH1B,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
LOC_Os07g31370.1 RAB6A, ATRABH1B,... H-class RAB GTPase 0.01 OrthoFinder output from all 47 species
MA_131015g0020 AtRABH1e, RABH1e Ras-related protein RABH1d OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g04692 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12814 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05987 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g05988 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15125 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g24084 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g01599 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g05830 AtRABH1e, RABH1e H-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 172
No external refs found!