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  5. Cpa|evm.model.tig00021464.17

Cpa|evm.model.tig00021464.17 (ATRHM2, RHM2, ATMUM4, MUM4)


Aliases : ATRHM2, RHM2, ATMUM4, MUM4

Description : Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana


Gene families : OG0000903 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021464.17
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Ala_g02128 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g09414 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g34995 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000482 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description:... 0.02 OrthoFinder output from all 47 species
Cba_g10323 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g67883 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G025600.1 RHM1, ROL1,... UDP-L-rhamnose synthase *(RHM) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.33G035200.1 NRS/ER, UER1,... dTDP-rhamnose synthase *(NRS-ER) & original description:... 0.03 OrthoFinder output from all 47 species
Cre02.g083800 RHM1, ROL1, ATRHM1 Trifunctional UDP-glucose... 0.02 OrthoFinder output from all 47 species
GSVIVT01014091001 ATRHM3, RHM3 Carbohydrate metabolism.nucleotide sugar... 0.01 OrthoFinder output from all 47 species
Len_g15700 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.02 OrthoFinder output from all 47 species
Mp6g02720.1 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase 0.01 OrthoFinder output from all 47 species
Msp_g10007 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12116 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05698 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g09975 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g12352 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005330 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description:... 0.02 OrthoFinder output from all 47 species
Smo266803 RHM1, ROL1, ATRHM1 Carbohydrate metabolism.nucleotide sugar... 0.03 OrthoFinder output from all 47 species
Solyc10g007480.4.1 RHM1, ROL1,... UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
Zm00001e015435_P001 NRS/ER, UER1,... UDP-L-rhamnose synthase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 10 317
No external refs found!