Cpa|evm.model.tig00021314.13

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).USP39 snRNP-associated protein

Gene families : OG0005722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005722_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021314.13

Target	Alias	Description	ECC score	Gene Family Method
Adi_g105601	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.01	OrthoFinder output from all 47 species
Ala_g04780	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.02	OrthoFinder output from all 47 species
Aop_g09374	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.02	OrthoFinder output from all 47 species
Ceric.08G005200.1	Ceric.08G005200	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.01	OrthoFinder output from all 47 species
Cre17.g721600	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Mp1g24510.1	No alias	protein factor (USP39) of U4/U6 U5 small nuclear...	0.01	OrthoFinder output from all 47 species
Pir_g14987	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.01	OrthoFinder output from all 47 species
Ppi_g11614	No alias	component *(USP39) of U4/U6.U5 tri-snRNP complex &...	0.01	OrthoFinder output from all 47 species
Smo90860	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Zm00001e013065_P004	Zm00001e013065	protein factor (USP39) of U4/U6 U5 small nuclear...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	HCCA
MF	GO:0019107	myristoyltransferase activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001607	Znf_UBP	52	112
IPR001394	Peptidase_C19_UCH	153	489

External Links

No external refs found!

Cpa|evm.model.tig00021314.13

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation