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  5. Cpa|evm.model.tig00021244.17

Cpa|evm.model.tig00021244.17


Description : Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays


Gene families : OG0001693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001693_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021244.17

Target Alias Description ECC score Gene Family Method Actions
Dde_g10740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g14720 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41554 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.01 OrthoFinder output from all 47 species
Nbi_g10598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16591 No alias plastidial RNA splicing factor *(cPTH)) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g59675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e020089_P001 Zm00001e020089 cPTH plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004107 chorismate synthase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001328 Pept_tRNA_hydro 145 216
IPR001328 Pept_tRNA_hydro 247 326
No external refs found!