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  5. Cpa|evm.model.tig00021133.10

Cpa|evm.model.tig00021133.10 (TRZ4)


Aliases : TRZ4

Description : RNA processing.ribonuclease activities.RNase Z endoribonuclease


Gene families : OG0002827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021133.10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00038090 TRZ4,... RNA processing.ribonuclease activities.RNase Z endoribonuclease 0.01 OrthoFinder output from all 47 species
Adi_g014251 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.1Z268100.1 TRZ4, Ceric.1Z268100 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.27G032400.1 TRZ4, Ceric.27G032400 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Ceric.31G069800.1 TRZ4, Ceric.31G069800 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Lfl_g16047 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Mp7g11230.1 TRZ3 endoribonuclease (RNase Z) 0.03 OrthoFinder output from all 47 species
Ppi_g08779 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Solyc12g044370.3.1 TRZ4, Solyc12g044370 endoribonuclease (RNase Z) 0.01 OrthoFinder output from all 47 species
Spa_g12323 TRZ4 EC_3.1 hydrolase acting on ester bond & original... 0.01 OrthoFinder output from all 47 species
Zm00001e026117_P001 TRZ4, Zm00001e026117 endoribonuclease (RNase Z) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR027794 tRNase_Z_dom 9 62
No external refs found!