Cpa|evm.model.tig00021122.18 (AtRH36, SWA3, RH36)

Aliases : AtRH36, SWA3, RH36

Description : DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana

Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021122.18

Target	Alias	Description	ECC score	Gene Family Method
Aev_g00934	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.02	OrthoFinder output from all 47 species
Cre12.g505200	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Cre16.g683500	AtRH36, SWA3, RH36	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Msp_g10939	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006672	ceramide metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	26	192
IPR001650	Helicase_C	225	293

External Links

No external refs found!