Cpa|evm.model.tig00020904.19 (SMD1, RDR2)

Aliases : SMD1, RDR2

Description : Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica

Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020904.19
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
Ala_g16854	SDE1, RDR6, SGS2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene33144.t2	ATRDRP1, RDR1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g12890	ATRDRP1, RDR1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dac_g08042	ATRDRP1, RDR1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g23245	ATRDRP1, RDR1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g02005	ATRDRP1, RDR1	not classified & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	311	391
IPR007855	RNA-dep_RNA_pol_euk-typ	392	800

External Links

No external refs found!