Cpa|evm.model.tig00020848.68

Description : Cell cycle.interphase.DNA replication.elongation.DNA polymerase alpha complex.POLA3 primase component

Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020848.68
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00151060	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA replication.elongation.DNA...	0.02	OrthoFinder output from all 47 species
AT1G67320	No alias	DNA primase, large subunit family	0.05	OrthoFinder output from all 47 species
Als_g00918	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Aop_g06919	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Azfi_s0242.g059810	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Ceric.22G004000.1	Ceric.22G004000	primase component *(POLA3) of DNA polymerase alpha...	0.08	OrthoFinder output from all 47 species
Cre06.g293000	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.11	OrthoFinder output from all 47 species
Dac_g13828	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Dcu_g14762	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
GSVIVT01029087001	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.05	OrthoFinder output from all 47 species
Gb_25310	No alias	Probable DNA primase large subunit OS=Arabidopsis...	0.1	OrthoFinder output from all 47 species
Gb_25312	No alias	primase component POLA3 of DNA polymerase alpha complex	0.11	OrthoFinder output from all 47 species
LOC_Os07g22400.2	LOC_Os07g22400	primase component POLA3 of DNA polymerase alpha complex	0.09	OrthoFinder output from all 47 species
MA_99205g0020	No alias	primase component POLA3 of DNA polymerase alpha complex	0.06	OrthoFinder output from all 47 species
Mp7g17480.1	No alias	primase component POLA3 of DNA polymerase alpha complex	0.1	OrthoFinder output from all 47 species
Msp_g07837	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Nbi_g10404	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Ppi_g63485	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015210	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Smo88080	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.01	OrthoFinder output from all 47 species
Solyc04g045530.4.1	Solyc04g045530	primase component POLA3 of DNA polymerase alpha complex	0.03	OrthoFinder output from all 47 species
Spa_g08160	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Tin_g10410	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Zm00001e039405_P003	Zm00001e039405	primase component POLA3 of DNA polymerase alpha complex	0.01	OrthoFinder output from all 47 species
Zm00001e040751_P005	Zm00001e040751	primase component POLA3 of DNA polymerase alpha complex	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003896	DNA primase activity	IEA	Interproscan
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0031144	proteasome localization	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031503	protein-containing complex localization	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0071630	nuclear protein quality control by the ubiquitin-proteasome system	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007238	DNA_primase_lsu_euk/arc	178	441

External Links

No external refs found!

Cpa|evm.model.tig00020848.68

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation