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  5. Cpa|evm.model.tig00020816.63

Cpa|evm.model.tig00020816.63


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).PRPF3 snRNP-associated protein


Gene families : OG0005854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005854_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020816.63

Target Alias Description ECC score Gene Family Method Actions
Ceric.33G040100.1 Ceric.33G040100 component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g10004 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g06703 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR010541 Prp3_C 595 730
IPR013881 Pre-mRNA_splic_Prp3 380 554
No external refs found!