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  5. Cpa|evm.model.tig00020684.23

Cpa|evm.model.tig00020684.23


No description available


Gene families : OG0005455 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005455_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020684.23
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Aev_g08680 TDP1 tyrosyl-DNA phosphodiesterase *(TDP1) & original... 0.01 OrthoFinder output from all 47 species
LOC_Os07g34598.1 TDP1, LOC_Os07g34598 tyrosyl-DNA phosphodiesterase (TDP1) 0.01 OrthoFinder output from all 47 species
MA_10435500g0010 No alias Tyrosyl-DNA phosphodiesterase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pp3c20_13830V3.1 TDP1, Pp3c20_13830 tyrosyl-DNA phosphodiesterase-related 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
MF GO:0008081 phosphoric diester hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004797 thymidine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR010347 Tdp1 151 505
No external refs found!