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  5. Cpa|evm.model.tig00020614.39

Cpa|evm.model.tig00020614.39 (ATRAD54, CHR25, RAD54)


Aliases : ATRAD54, CHR25, RAD54

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad54-like group.Rad54 chromatin remodeling factor


Gene families : OG0003309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020614.39
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT3G19210 ATRAD54, CHR25, RAD54 homolog of RAD54 0.02 OrthoFinder output from all 47 species
Aop_g61089 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g11241 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G046200.1 ATRAD54, CHR25,... chromatin remodeling factor *(RAD54) & original... 0.1 OrthoFinder output from all 47 species
Cre03.g189000 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder output from all 47 species
Cre10.g430950 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dcu_g39643 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01031756001 ATRAD54, CHR25, RAD54 Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_13098 ATRAD54, CHR25, RAD54 Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_13099 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Gb_22245 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52510.1 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.04 OrthoFinder output from all 47 species
Len_g24635 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10427620g0010 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.01 OrthoFinder output from all 47 species
Mp6g06120.1 ATRAD54, CHR25, RAD54 chromatin remodeling factor (Rad54) 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006755 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original... 0.02 OrthoFinder output from all 47 species
Smo412612 ATRAD54, CHR25, RAD54 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Smo421707 ATRAD54, CHR25, RAD54 Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Solyc04g056410.3.1 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.07 OrthoFinder output from all 47 species
Spa_g37488 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49299 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45162 ATRAD54, CHR25, RAD54 chromaTin remodeling factor *(RAD54) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015936_P001 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005815 microtubule organizing center IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0031144 proteasome localization IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0031503 protein-containing complex localization IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 154 453
IPR001650 Helicase_C 506 619
No external refs found!