Cpa|evm.model.tig00020592.38

Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.AP1/2B large beta subunit

Gene families : OG0001612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001612_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020592.38

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00095780	evm_27.TU.AmTr_v1...	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.03	OrthoFinder output from all 47 species
AMTR_s00109p00033810	evm_27.TU.AmTr_v1...	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.02	OrthoFinder output from all 47 species
AT4G23460	No alias	Adaptin family protein	0.04	OrthoFinder output from all 47 species
AT5G11490	No alias	adaptin family protein	0.04	OrthoFinder output from all 47 species
Ala_g16231	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Als_g46996	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Aop_g14503	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.02	OrthoFinder output from all 47 species
Azfi_s0267.g061012	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.02	OrthoFinder output from all 47 species
Cba_g31750	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Ceric.37G056900.1	Ceric.37G056900	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020592.39	No alias	No description available	0.05	OrthoFinder output from all 47 species
Cre05.g234665	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.03	OrthoFinder output from all 47 species
Cre11.g478156	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder output from all 47 species
Dac_g03831	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Dcu_g01903	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.04	OrthoFinder output from all 47 species
Dcu_g07725	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Dde_g06808	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.04	OrthoFinder output from all 47 species
Dde_g20964	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.01	OrthoFinder output from all 47 species
GSVIVT01019391001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.06	OrthoFinder output from all 47 species
GSVIVT01035675001	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.02	OrthoFinder output from all 47 species
Gb_11857	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
LOC_Os01g43630.1	LOC_Os01g43630	large subunit beta of AP-4 vacuole cargo adaptor complex	0.07	OrthoFinder output from all 47 species
LOC_Os03g23950.1	LOC_Os03g23950	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Len_g00739	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.01	OrthoFinder output from all 47 species
Lfl_g02298	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Lfl_g05633	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.02	OrthoFinder output from all 47 species
MA_10429323g0010	No alias	Beta-adaptin-like protein A OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10436050g0010	No alias	Beta-adaptin-like protein C OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_4821g0010	No alias	Beta-adaptin-like protein A OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
Mp1g25810.1	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Mp6g09050.1	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex	0.03	OrthoFinder output from all 47 species
Msp_g00711	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Msp_g04742	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.01	OrthoFinder output from all 47 species
Nbi_g10984	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Pir_g09755	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Pnu_g17187	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Ppi_g52666	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005044	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013913	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Sam_g13625	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.02	OrthoFinder output from all 47 species
Sam_g19395	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Smo269184	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder output from all 47 species
Smo269763	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.04	OrthoFinder output from all 47 species
Solyc08g068210.3.1	Solyc08g068210	large subunit beta of AP-4 vacuole cargo adaptor complex	0.03	OrthoFinder output from all 47 species
Solyc08g081320.3.1	Solyc08g081320	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Spa_g12477	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Spa_g16508	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.04	OrthoFinder output from all 47 species
Tin_g02154	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Zm00001e001693_P001	Zm00001e001693	large subunit beta of AP-1 trans-Golgi network cargo...	0.07	OrthoFinder output from all 47 species
Zm00001e020411_P002	Zm00001e020411	large subunit beta of AP-4 vacuole cargo adaptor complex	0.07	OrthoFinder output from all 47 species
Zm00001e027916_P001	Zm00001e027916	large subunit beta of AP-4 vacuole cargo adaptor complex	0.08	OrthoFinder output from all 47 species
Zm00001e038184_P001	Zm00001e038184	large subunit beta of AP-1 trans-Golgi network cargo...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	12	181
IPR002553	Clathrin/coatomer_adapt-like_N	182	489

External Links

No external refs found!

Cpa|evm.model.tig00020592.38

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation