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  5. Cpa|evm.model.tig00020563.151

Cpa|evm.model.tig00020563.151


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-E component


Gene families : OG0007427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020563.151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00069690 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
AT2G18740 No alias Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
AT4G30330 No alias Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Adi_g022466 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Aspi01Gene28255.t1 Aspi01Gene28255 component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Azfi_s0067.g036221 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Cba_g72544 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Cre08.g385200 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
LOC_Os02g03440.1 LOC_Os02g03440 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
LOC_Os08g05530.1 LOC_Os08g05530 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Mp5g07450.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015192 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Solyc03g098470.3.1 Solyc03g098470 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
MF GO:0000340 RNA 7-methylguanosine cap binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019107 myristoyltransferase activity IEP HCCA
BP GO:0030030 cell projection organization IEP HCCA
BP GO:0030031 cell projection assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034464 BBSome IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0044782 cilium organization IEP HCCA
BP GO:0060271 cilium assembly IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0120031 plasma membrane bounded cell projection assembly IEP HCCA
BP GO:0120036 plasma membrane bounded cell projection organization IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 18 82
No external refs found!