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  5. Cpa|evm.model.tig00020554.46

Cpa|evm.model.tig00020554.46 (VPS53, HIT1, ATVPS53)


Aliases : VPS53, HIT1, ATVPS53

Description : Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS53/HIT1 component


Gene families : OG0003936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020554.46

Target Alias Description ECC score Gene Family Method Actions
AT1G50500 VPS53, HIT1, ATVPS53 Membrane trafficking VPS53 family protein 0.02 OrthoFinder output from all 47 species
Aev_g06143 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Als_g01928 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Aspi01Gene55500.t1 VPS53, HIT1,... component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012081 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ceric.34G024900.1 VPS53, HIT1,... component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g22740 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
GSVIVT01016094001 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Gb_31032 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.01 OrthoFinder output from all 47 species
LOC_Os01g67880.1 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Lfl_g04212 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
MA_10429386g0010 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Mp8g18200.1 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ore_g16016 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Solyc04g049490.3.1 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Zm00001e018920_P001 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007234 Vps53_N 29 393
No external refs found!