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  5. Cpa|evm.model.tig00020510.74

Cpa|evm.model.tig00020510.74


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Imp3 assembly factor


Gene families : OG0006323 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006323_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020510.74
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AT5G15750 No alias Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 0.03 OrthoFinder output from all 47 species
Aob_g06281 No alias SSU processome assembly factor *(IMP3) & original... 0.03 OrthoFinder output from all 47 species
Cre03.g170750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dac_g03526 No alias SSU processome assembly factor *(IMP3) & original... 0.02 OrthoFinder output from all 47 species
Dde_g06755 No alias SSU processome assembly factor *(IMP3) & original... 0.02 OrthoFinder output from all 47 species
Gb_30440 No alias SSU processome assembly factor (IMP3) 0.01 OrthoFinder output from all 47 species
LOC_Os04g56670.2 LOC_Os04g56670 SSU processome assembly factor (IMP3) 0.01 OrthoFinder output from all 47 species
Mp3g02070.1 No alias SSU processome assembly factor (IMP3) 0.03 OrthoFinder output from all 47 species
Sam_g12181 No alias SSU processome assembly factor *(IMP3) & original... 0.01 OrthoFinder output from all 47 species
Smo236819 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc02g089280.3.1 Solyc02g089280 SSU processome assembly factor (IMP3) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 107 151
IPR001912 Ribosomal_S4/S9_N 4 62
No external refs found!