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  5. Cpa|evm.model.tig00001493.9

Cpa|evm.model.tig00001493.9


No description available


Gene families : OG0004386 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001493.9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00164390 evm_27.TU.AmTr_v1... Histone-binding protein MSI1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Als_g04318 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.01 OrthoFinder output from all 47 species
Aop_g05856 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g026948 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.04 OrthoFinder output from all 47 species
Cre17.g724850 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Ehy_g08357 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.01 OrthoFinder output from all 47 species
GSVIVT01015210001 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_37351 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os12g03822.1 LOC_Os12g03822 Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Lfl_g03164 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
MA_10425957g0010 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp4g21540.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Pp3c12_16950V3.1 Pp3c12_16950 Transducin family protein / WD-40 repeat family protein 0.02 OrthoFinder output from all 47 species
Sam_g10251 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Solyc07g039200.4.1 Solyc07g039200 WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g11514 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.01 OrthoFinder output from all 47 species
Tin_g10958 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Zm00001e027495_P001 Zm00001e027495 WD-40 repeat-containing protein MSI4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 383 420
IPR001680 WD40_repeat 321 334
IPR022052 Histone-bd_RBBP4_N 96 163
No external refs found!