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  5. Cpa|evm.model.tig00001424.6

Cpa|evm.model.tig00001424.6


Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.PYM component


Gene families : OG0005414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005414_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001424.6

Target Alias Description ECC score Gene Family Method Actions
Cre06.g279250 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
LOC_Os03g15560.1 PYM, LOC_Os03g15560 component PYM of RNA quality control Exon Junction complex 0.01 OrthoFinder output from all 47 species
Sam_g18776 No alias component *(PYM) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Zm00001e001129_P001 PYM, Zm00001e001129 component PYM of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR015362 WIBG_mago-bd 25 47
No external refs found!