Aliases : PBF1
Description : Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-6 component
Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G60820 | PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases)... | 0.07 | OrthoFinder output from all 47 species | |
Adi_g015227 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g01998 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Ala_g08818 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Als_g08527 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g00288 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0392.g067771 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Cba_g31823 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.24G072400.1 | PBF1, Ceric.24G072400 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
Cre26.g756797 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.16 | OrthoFinder output from all 47 species | |
Dac_g02574 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g00884 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g01948 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01000943001 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.01 | OrthoFinder output from all 47 species | |
GSVIVT01027613001 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.05 | OrthoFinder output from all 47 species | |
Gb_25087 | PBF1 | component beta type-6 of 26S proteasome | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os09g32800.1 | PBF1, LOC_Os09g32800 | component beta type-6 of 26S proteasome | 0.1 | OrthoFinder output from all 47 species | |
Mp1g12450.1 | PBF1 | component beta type-6 of 26S proteasome | 0.04 | OrthoFinder output from all 47 species | |
Msp_g43692 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g43343 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.05 | OrthoFinder output from all 47 species | |
Pir_g12796 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.01 | OrthoFinder output from all 47 species | |
Pp3c16_16960V3.1 | PBF1, Pp3c16_16960 | N-terminal nucleophile aminohydrolases (Ntn hydrolases)... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g09893 | No alias | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Smo124882 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.04 | OrthoFinder output from all 47 species | |
Smo94273 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.04 | OrthoFinder output from all 47 species | |
Solyc02g084920.3.1 | PBF1, Solyc02g084920 | component beta type-6 of 26S proteasome | 0.04 | OrthoFinder output from all 47 species | |
Spa_g13091 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g16539 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g30516 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e010121_P001 | PBF1, Zm00001e010121 | component beta type-6 of 26S proteasome | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e034624_P005 | PBF1, Zm00001e034624 | component beta type-6 of 26S proteasome | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004298 | threonine-type endopeptidase activity | IEA | Interproscan |
CC | GO:0005839 | proteasome core complex | IEA | Interproscan |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005096 | GTPase activator activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
MF | GO:0008047 | enzyme activator activity | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
CC | GO:0030117 | membrane coat | IEP | HCCA |
CC | GO:0030118 | clathrin coat | IEP | HCCA |
CC | GO:0030120 | vesicle coat | IEP | HCCA |
CC | GO:0030125 | clathrin vesicle coat | IEP | HCCA |
CC | GO:0030130 | clathrin coat of trans-Golgi network vesicle | IEP | HCCA |
CC | GO:0030132 | clathrin coat of coated pit | IEP | HCCA |
MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0030695 | GTPase regulator activity | IEP | HCCA |
CC | GO:0030880 | RNA polymerase complex | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | HCCA |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:0140677 | molecular function activator activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001353 | Proteasome_sua/b | 8 | 199 |
No external refs found! |