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  5. Cpa|evm.model.tig00001333.30

Cpa|evm.model.tig00001333.30 (CTF18)


Aliases : CTF18

No description available


Gene families : OG0003934 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003934_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001333.30
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00097050 CTF18,... Replication factor C subunit 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G04730 CTF18 P-loop containing nucleoside triphosphate hydrolases... 0.06 OrthoFinder output from all 47 species
Ceric.10G031900.1 CTF18, Ceric.10G031900 not classified & original description: pacid=50612692... 0.04 OrthoFinder output from all 47 species
Cre16.g686950 CTF18 Replication factor C subunit 1 OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
Gb_20313 AMY3, ATAMY3 Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Gb_40705 CTF18 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g15810.1 CTF18, LOC_Os03g15810 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g09263 CTF18 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10428330g0010 CTF18 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp2g16010.1 CTF18 Replication factor C subunit 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Nbi_g06869 CTF18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g091650.3.1 CTF18, Solyc09g091650 Replication factor C subunit 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 287 372
No external refs found!