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  5. Cpa|evm.model.tig00001001.25

Cpa|evm.model.tig00001001.25 (RAB2A, AT-RAB2,...)


Aliases : RAB2A, AT-RAB2, RAB-B1B, ATRAB-B1B, RABB1C, ATRABB1C, ATRAB2A

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.B-class RAB GTPase


Gene families : OG0001412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001001.25
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Adi_g009291 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12062 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g07703 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene51678.t1 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g57741 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z080100.1 RAB2A, AT-RAB2,... B-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g05462 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002785001 RAB2A, AT-RAB2,... Ras-related protein RABB1c OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01030140001 RAB2A, AT-RAB2,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Len_g03617 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427326g0010 RAB2A, AT-RAB2,... Ras-related protein RABB1c OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_192322g0010 RAB2A, AT-RAB2,... Ras-related protein Rab-2-B OS=Zea mays... 0.01 OrthoFinder output from all 47 species
MA_5611g0010 RAB2A, AT-RAB2,... B-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Msp_g08873 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04594 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020920 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: CDS=1183-1821 0.03 OrthoFinder output from all 47 species
Solyc07g056150.4.1 RAB2A, AT-RAB2,... B-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Spa_g11372 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g01703 RAB2A, AT-RAB2,... B-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007846_P001 RAB2A, AT-RAB2,... B-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Zm00001e014961_P003 RAB2A, AT-RAB2,... B-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e041052_P001 RAB2A, AT-RAB2,... B-class RAB GTPase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 8 168
No external refs found!